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ath1 ataxin-2-like protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540677, updated on 18-Sep-2024

Summary

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Official Symbol
ath1
Official Full Name
ataxin-2-like protein
Primary source
PomBase:SPBC21B10.03c
Locus tag
SPOM_SPBC21B10.03C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ath1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1666960..1669755)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene vacuolar transporter chaperone (VTC) complex, GTPase regulator subunit Nrf1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Cdc28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of stress granule assembly in Schizosaccharomyces pombe. Wang CY, et al. RNA, 2012 Apr. PMID 22328580, Free PMC Article
  2. Mkt1 is required for RNAi-mediated silencing and establishment of heterochromatin in fission yeast. Taglini F, et al. Nucleic Acids Res, 2020 Feb 20. PMID 31822915, Free PMC Article
  3. Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA. Saitoh S, et al. Cell, 2002 May 31. PMID 12062100
  4. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
  5. Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase. Chen JS, et al. Mol Cell Proteomics, 2013 May. PMID 23297348, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA metabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in stress granule assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell division site HDA PubMed 
is_active_in cytoplasmic stress granule EXP
Inferred from Experiment
more info
 PubMed 
is_active_in cytoplasmic stress granule IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1666960..1669755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021579.3 → NP_595684.1  ataxin-2-like protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595684.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9USW1
    Conserved Domains (2) summary
    COG5180
    Location:1 → 739
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:156 → 220
    LsmAD; LsmAD domain
Nucleotide Protein
Heading Accession and Version

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