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cxr1 splicing factor Cxr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540551, updated on 18-Sep-2024

Summary

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Official Symbol
cxr1
Official Full Name
splicing factor Cxr1
Primary source
PomBase:SPBC23E6.01c
Locus tag
SPOM_SPBC23E6.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBPJ758.01
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Genomic context

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See cxr1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3835397..3837264, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C2 domain protein Git1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA translocase/ SUMO-targeted ubiquitin ligase E3 Neighboring gene protein N-terminal amidase nta1 Neighboring gene ncRNA Neighboring gene U3 snoRNP-associated protein Utp10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fission yeast homologs of human histone H3 lysine 4 demethylase regulate a common set of genes with diverse functions. Nicolas E, et al. J Biol Chem, 2006 Nov 24. PMID 16990277
  2. Analysis of stress granule assembly in Schizosaccharomyces pombe. Wang CY, et al. RNA, 2012 Apr. PMID 22328580, Free PMC Article
  3. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
  4. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
  5. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Rallis C, et al. Biol Open, 2014 Feb 15. PMID 24463365, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA splice site recognition IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of U1 snRNP ISO
Inferred from Sequence Orthology
more info
  
part_of U2-type prespliceosome ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytoplasmic stress granule EXP
Inferred from Experiment
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
splicing factor Cxr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3835397..3837264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022521.4 → NP_596601.2  splicing factor Cxr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596601.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60176, Q9P7F0
    Conserved Domains (4) summary
    COG0724
    Location:70 → 376
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12346
    Location:302 → 373
    RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
    cd12611
    Location:94 → 173
    RRM1_NGR1_NAM8_like; RNA recognition motif 1 in yeast negative growth regulatory protein NGR1, yeast protein NAM8 and similar proteins
    cd12613
    Location:185 → 264
    RRM2_NGR1_NAM8_like; RNA recognition motif 2 in yeast negative growth regulatory protein NGR1, yeast protein NAM8 and similar proteins
Nucleotide Protein
Heading Accession and Version

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