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pmr1 P-type calcium transport ATPase Pmr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540383, updated on 18-Sep-2024

Summary

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Official Symbol
pmr1
Official Full Name
P-type calcium transport ATPase Pmr1
Primary source
PomBase:SPBC31E1.02c
Locus tag
SPOM_SPBC31E1.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
cps5
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Genomic context

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See pmr1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (239838..243642, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene autophagy-associated protein Atg2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin-like protein modifier Hub1 Neighboring gene SNARE Pep12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pmr1, a P-type ATPase, and Pdt1, an Nramp homologue, cooperatively regulate cell morphogenesis in fission yeast: the importance of Mn2+ homeostasis. Maeda T, et al. Genes Cells, 2004 Jan. PMID 14723709
  2. Schizosaccharomyces pombe Pmr1p is essential for cell wall integrity and is required for polarized cell growth and cytokinesis. Cortés JC, et al. Eukaryot Cell, 2004 Oct. PMID 15470240, Free PMC Article
  3. Coordinated Roles of the Putative Ceramide-Conjugation Protein, Cwh43, and a Mn(2+)-Transporting, P-Type ATPase, Pmr1, in Fission Yeast. Nakazawa N, et al. G3 (Bethesda), 2019 Aug 8. PMID 31201205, Free PMC Article
  4. Characterization of a fission yeast P(5)-type ATPase homologue that is essential for Ca(2+)/Mn(2+ )homeostasis in the absence of P(2)-type ATPases. Furune T, et al. Genes Genet Syst, 2008 Oct. PMID 19168988
  5. Transient receptor potential (TRP) and Cch1-Yam8 channels play key roles in the regulation of cytoplasmic Ca2+ in fission yeast. Ma Y, et al. PLoS One, 2011. PMID 21811607, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ABC-type manganese transporter activity TAS
Traceable Author Statement
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables P-type calcium transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium ion binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in calcium ion transmembrane transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in manganese ion transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in manganese ion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in release of sequestered calcium ion into cytosol by Golgi EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
P-type calcium transport ATPase Pmr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    239838..243642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021005.3 → NP_595098.1  P-type calcium transport ATPase Pmr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595098.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59868
    Conserved Domains (6) summary
    TIGR01522
    Location:2 → 886
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:599 → 671
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:87 → 318
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:711 → 880
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:5 → 75
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:380 → 467
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
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