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pdb1 pyruvate dehydrogenase e1 component beta subunit Pdb1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540273, updated on 18-Sep-2024

Summary

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Official Symbol
pdb1
Official Full Name
pyruvate dehydrogenase e1 component beta subunit Pdb1
Primary source
PomBase:SPBC30D10.13c
Locus tag
SPOM_SPBC30D10.13C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
agg1
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Genomic context

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See pdb1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3070467..3072018)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene dienelactone hydrolase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial 37S ribosomal protein mS33 Neighboring gene pig-Q Neighboring gene ncRNA Neighboring gene TORC2 serine/threonine protein kinase Tor1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations which reduce levels of pyruvate dehydrogenase in Schizosaccharomyces pombe cause a requirement for arginine or glutamine. Cavan G, et al. FEMS Microbiol Lett, 1994 Dec 15. PMID 7851743
  2. Cloning and sequence of a gene encoding the pyruvate dehydrogenase E1 beta subunit of Schizosaccharomyces pombe. Cavan G, et al. Gene, 1995 Jan 11. PMID 7828917
  3. Nucleocytoplasmic transport in the midzone membrane domain controls yeast mitotic spindle disassembly. Lucena R, et al. J Cell Biol, 2015 May 11. PMID 25963819, Free PMC Article
  4. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
  5. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables pyruvate dehydrogenase (acetyl-transferring) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables pyruvate dehydrogenase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from pyruvate IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in acetyl-CoA biosynthetic process from pyruvate IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in aerobic respiration IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion HDA PubMed 
part_of pyruvate dehydrogenase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pyruvate dehydrogenase e1 component beta subunit Pdb1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3070467..3072018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022193.3 → NP_596272.1  pyruvate dehydrogenase e1 component beta subunit Pdb1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596272.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09171
    Conserved Domains (3) summary
    cd07036
    Location:42 → 208
    TPP_PYR_E1-PDHc-beta_like; Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins
    PLN02683
    Location:25 → 364
    PLN02683; pyruvate dehydrogenase E1 component subunit beta
    pfam02780
    Location:231 → 355
    Transketolase_C; Transketolase, C-terminal domain
Nucleotide Protein
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