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hht3 histone H3 h3.3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539804, updated on 18-Sep-2024

Summary

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Official Symbol
hht3
Official Full Name
histone H3 h3.3
Primary source
PomBase:SPBC1105.11c
Locus tag
SPOM_SPBC1105.11C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
clo5; h3.3
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Genomic context

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See hht3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3528800..3529565, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RAVE complex subunit Rav1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone H4 h4.3 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Epigenetics. Restricted epigenetic inheritance of H3K9 methylation. Audergon PN, et al. Science, 2015 Apr 3. PMID 25838386, Free PMC Article
  2. The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin. Shan CM, et al. Cell Rep, 2021 May 18. PMID 34010645, Free PMC Article
  3. Set7 Is a H3K37 Methyltransferase in Schizosaccharomyces pombe and Is Required for Proper Gametogenesis. Shen Y, et al. Structure, 2019 Apr 2. PMID 30773398
  4. Chromodomain-mediated oligomerization of HP1 suggests a nucleosome-bridging mechanism for heterochromatin assembly. Canzio D, et al. Mol Cell, 2011 Jan 7. PMID 21211724, Free PMC Article
  5. High-affinity binding of Chp1 chromodomain to K9 methylated histone H3 is required to establish centromeric heterochromatin. Schalch T, et al. Mol Cell, 2009 Apr 10. PMID 19362535, Free PMC Article

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding ISM
Inferred from Sequence Model
more info
  
enables chromatin-protein adaptor activity EXP
Inferred from Experiment
more info
 PubMed 
enables chromatin-protein adaptor activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA damage response IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heterochromatin boundary formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in heterochromatin formation EXP
Inferred from Experiment
more info
 PubMed 
involved_in mitotic sister chromatid biorientation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pericentric heterochromatin formation EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in mating-type region heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nucleosome ISM
Inferred from Sequence Model
more info
  
is_active_in nucleus EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in pericentric heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in subtelomeric heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
histone H3 h3.3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3528800..3529565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022386.3 → NP_596467.1  histone H3 h3.3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596467.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P09988, P10651
    Conserved Domains (2) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
    pfam00125
    Location:1 → 132
    Histone; Core histone H2A/H2B/H3/H4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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