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arp6 Swr1 actin-like protein Arp6 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539564, updated on 18-Sep-2024

Summary

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Official Symbol
arp6
Official Full Name
Swr1 actin-like protein Arp6
Primary source
PomBase:SPCC550.12
Locus tag
SPOM_SPCC550.12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See arp6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (1211939..1213659)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene ncRNA Neighboring gene karyopherin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Hsk1-Dfp1 kinase complex regulatory subunit Dfp1 Neighboring gene ncRNA Neighboring gene vigilin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains. Buchanan L, et al. PLoS Genet, 2009 Nov. PMID 19911051, Free PMC Article
  2. Histone variant H2A.Z regulates centromere silencing and chromosome segregation in fission yeast. Hou H, et al. J Biol Chem, 2010 Jan 15. PMID 19910462, Free PMC Article
  3. An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Kim HS, et al. Nat Struct Mol Biol, 2009 Dec. PMID 19915592, Free PMC Article
  4. Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Zofall M, et al. Nature, 2009 Sep 17. PMID 19693008, Free PMC Article
  5. Widespread cotranslational formation of protein complexes. Duncan CD, et al. PLoS Genet, 2011 Dec. PMID 22144913, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables nucleosome binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling IPI
Inferred from Physical Interaction
more info
 PubMed 
involved_in transcription initiation-coupled chromatin remodeling IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of Swr1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Swr1 complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
Swr1 actin-like protein Arp6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1211939..1213659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023095.3 → NP_588104.1  Swr1 actin-like protein Arp6 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588104.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94241
    Conserved Domains (2) summary
    smart00268
    Location:6 → 400
    ACTIN; Actin
    COG5277
    Location:1 → 399
    COG5277; Actin-related protein [Cytoskeleton]
Nucleotide Protein
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