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atg1 autophagy serine/threonine protein kinase Atg1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539461, updated on 22-Jun-2024

Summary

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Gene symbol
atg1
Gene description
autophagy serine/threonine protein kinase Atg1
Locus tag
SPOM_SPCC63.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
cvt10; ppk36
Old locus tag
SPCC63.08c
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Genomic context

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See atg1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (849833..852682, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene tRNA-Ser Neighboring gene ncRNA Neighboring gene tRNA guanylyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Atg1 kinase in fission yeast is activated by Atg11-mediated dimerization and cis-autophosphorylation. Pan ZQ, et al. Elife, 2020 Sep 10. PMID 32909946, Free PMC Article
  2. Conserved and unique features of the fission yeast core Atg1 complex. Nanji T, et al. Autophagy, 2017. PMID 28976798, Free PMC Article
  3. Fission yeast Vps1 and Atg8 contribute to oxidative stress resistance. Mikawa T, et al. Genes Cells, 2010 Mar. PMID 20070859
  4. The RHEB-mTOR axis regulates expression of Tf2 transposons in fission yeast. Nakase Y, et al. J Cell Sci, 2018 Nov 21. PMID 30301783
  5. Fission yeast autophagy induced by nitrogen starvation generates a nitrogen source that drives adaptation processes. Kohda TA, et al. Genes Cells, 2007 Feb. PMID 17295836

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in autophagy of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in macroautophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in piecemeal microautophagy of the nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein autophosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of autophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in response to starvation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in reticulophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in signaling NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex EXP
Inferred from Experiment
more info
 PubMed 
is_active_in autophagosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in phagophore assembly site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in phagophore assembly site membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
autophagy serine/threonine protein kinase Atg1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    849833..852682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022973.3 → NP_587982.1  autophagy serine/threonine protein kinase Atg1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587982.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9Y7T4
    Conserved Domains (3) summary
    smart00220
    Location:14 → 296
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14009
    Location:20 → 306
    STKc_ATG1_ULK_like; Catalytic domain of the Serine/Threonine kinases, Autophagy-related protein 1 and Unc-51-like kinases
    pfam12063
    Location:590 → 806
    DUF3543; Domain of unknown function (DUF3543)
Nucleotide Protein
Heading Accession and Version

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