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mde7 RNA-binding protein Mde7 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538704, updated on 18-Sep-2024

Summary

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Official Symbol
mde7
Official Full Name
RNA-binding protein Mde7
Primary source
PomBase:SPCC320.07c
Locus tag
SPOM_SPCC320.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See mde7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (155906..158191)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene sulphate transporter Neighboring gene ncRNA Neighboring gene ERMES complex GTPase subunit Gem1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide screen for cell growth regulators in fission yeast. Weston L, et al. J Cell Sci, 2017 Jun 15. PMID 28476936, Free PMC Article
  2. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, et al. Nucleic Acids Res, 2023 Oct 13. PMID 37548402, Free PMC Article
  3. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA processing ISO
Inferred from Sequence Orthology
more info
 PubMed 
involved_in regulation of mRNA catabolic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm HDA PubMed 

General protein information

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Preferred Names
RNA-binding protein Mde7

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    155906..158191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022717.1 → NP_587722.1  RNA-binding protein Mde7 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587722.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59784
    Conserved Domains (3) summary
    COG0724
    Location:576 → 667
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12245
    Location:600 → 678
    RRM_scw1_like; RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins
    cl17169
    Location:226 → 312
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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