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CAOG_08467 U6 snRNA-associated Sm-like protein LSm5 [ Capsaspora owczarzaki ATCC 30864 ]

Gene ID: 23301864, updated on 9-Nov-2023

Summary

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Gene symbol
CAOG_08467
Gene description
U6 snRNA-associated Sm-like protein LSm5
Locus tag
CAOG_08467
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Capsaspora owczarzaki ATCC 30864 (strain: ATCC 30864, nat-host: pulmonate snail, culture-collection: ATCC:30864)
Lineage
Eukaryota; Filasterea; Capsaspora
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Genomic context

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Location:
chromosome: Unknown
Exon count:
6

NW_011887292.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene myosin IB Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011887292.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011887292.1 Reference assembly

    Range
    3456930..3458003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011271737.1 → XP_011270039.1  U6 snRNA-associated Sm-like protein LSm5 [Capsaspora owczarzaki ATCC 30864]

    See identical proteins and their annotated locations for XP_011270039.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D2WJR7
    Conserved Domains (1) summary
    cd01732
    Location:11 → 86
    LSm5; Like-Sm protein 5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
EPH53911.1

Gene LinkOut

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Molecular Biology Databases