U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC21396714 heat stress transcription factor B-4b [ Morus notabilis ]

Gene ID: 21396714, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC21396714
Gene description
heat stress transcription factor B-4b
Locus tag
L484_013542
Gene type
protein coding
RefSeq status
MODEL
Organism
Morus notabilis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Moreae; Morus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC21396714 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM41409v2 (GCF_000414095.1) Unplaced Scaffold NW_010357693.1 (194434..197185, complement)

NW_010357693.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g16860 Neighboring gene F-box protein At2g32560 Neighboring gene Holliday junction resolvase MOC1, chloroplastic Neighboring gene putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial Neighboring gene putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_010357693 Unplaced Scaffold Reference ASM41409v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heat stress transcription factor B-4b
Names
Heat stress transcription factor B-4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Morus notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41409v2

Genomic

  1. NW_010357693.1 Reference ASM41409v2

    Range
    194434..197185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010090661.2 → XP_010088963.2  heat stress transcription factor B-4b

    UniProtKB/TrEMBL
    W9QRV6
    Conserved Domains (1) summary
    smart00415
    Location:25 → 117
    HSF; heat shock factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases