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LOC21385051 basic leucine zipper 61 [ Morus notabilis ]

Gene ID: 21385051, updated on 21-Dec-2023

Summary

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Gene symbol
LOC21385051
Gene description
basic leucine zipper 61
Locus tag
L484_001449
Gene type
protein coding
RefSeq status
MODEL
Organism
Morus notabilis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Moreae; Morus
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Genomic context

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See LOC21385051 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM41409v2 (GCF_000414095.1) Unplaced Scaffold NW_010362180.1 (19454..25155, complement)

NW_010362180.1Genomic Context describing neighboring genes Neighboring gene ervatamin-B Neighboring gene pentatricopeptide repeat-containing protein At1g06270

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010362180 Unplaced Scaffold Reference ASM41409v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper 61
Names
Transcription factor VIP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morus notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41409v2

Genomic

  1. NW_010362180.1 Reference ASM41409v2

    Range
    19454..25155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010101199.2 → XP_010099501.1  basic leucine zipper 61 isoform X2

    See identical proteins and their annotated locations for XP_010099501.1

    UniProtKB/TrEMBL
    W9RA57
    Conserved Domains (1) summary
    cd14703
    Location:205 → 255
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain

  2. XM_024167613.1 → XP_024023381.1  basic leucine zipper 61 isoform X1

    Conserved Domains (1) summary
    cd14703
    Location:205 → 255
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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