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EPHA5 EPH receptor A5 [ Homo sapiens (human) ]

Gene ID: 2044, updated on 14-Nov-2024

Summary

Official Symbol
EPHA5provided by HGNC
Official Full Name
EPH receptor A5provided by HGNC
Primary source
HGNC:HGNC:3389
See related
Ensembl:ENSG00000145242 MIM:600004; AllianceGenome:HGNC:3389
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EK7; CEK7; EHK1; HEK7; EHK-1; TYRO4
Summary
This gene belongs to the ephrin receptor subfamily of the protein-tyrosine kinase family. EPH and EPH-related receptors have been implicated in mediating developmental events, particularly in the nervous system. Receptors in the EPH subfamily typically have a single kinase domain and an extracellular region containing a Cys-rich domain and 2 fibronectin type III repeats. The ephrin receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Aug 2013]
Expression
Biased expression in brain (RPKM 4.9), ovary (RPKM 1.0) and 6 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

See EPHA5 in Genome Data Viewer
Location:
4q13.1-q13.2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (65319567..65670489, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (68756500..69108844, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (66185285..66536207, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:66106913-66107790 Neighboring gene uncharacterized LOC124900852 Neighboring gene long intergenic non-protein coding RNA 2835 Neighboring gene ribosomal protein L6 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:66533825-66534356 Neighboring gene EPHA5 antisense RNA 1 Neighboring gene uncharacterized LOC105377258 Neighboring gene RNA, U2 small nuclear 40, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables GPI-linked ephrin receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables boss receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables brain-derived neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables ephrin receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables epidermal growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables fibroblast growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables hepatocyte growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables histone H2AXY142 kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables histone H3Y41 kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables insulin receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables insulin-like growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables macrophage colony-stimulating factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables placental growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables platelet-derived growth factor alpha-receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables platelet-derived growth factor beta-receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein tyrosine kinase collagen receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables stem cell factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane-ephrin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transmembrane-ephrin receptor activity NAS
Non-traceable Author Statement
more info
PubMed 
enables vascular endothelial growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in Kit signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in axon guidance ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in brain-derived neurotrophic factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
involved_in collagen-activated tyrosine kinase receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in ephrin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in ephrin receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in hepatocyte growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in hippocampus development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in insulin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in insulin-like growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in macrophage colony-stimulating factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in neuron development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in platelet-derived growth factor receptor-alpha signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in platelet-derived growth factor receptor-beta signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of CREB transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of actin cytoskeleton organization ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of insulin secretion involved in cellular response to glucose stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in vascular endothelial growth factor receptor-1 signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in axon ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
located_in rough endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ephrin type-A receptor 5
Names
EPH homology kinase 1
EPH-like kinase 7
brain-specific kinase
epididymis secretory sperm binding protein
receptor protein-tyrosine kinase HEK7
tyrosine-protein kinase receptor EHK-1
NP_001268694.1
NP_001268695.1
NP_001268696.1
NP_001305690.1
NP_004430.4
NP_872272.2
XP_005265710.1
XP_011530037.1
XP_016863367.1
XP_016863369.1
XP_016863370.1
XP_047305718.1
XP_047305719.1
XP_054205160.1
XP_054205161.1
XP_054205162.1
XP_054205163.1
XP_054205164.1
XP_054205165.1
XP_054205166.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281765.3NP_001268694.1  ephrin type-A receptor 5 isoform c

    See identical proteins and their annotated locations for NP_001268694.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest protein (isoform c).
    Source sequence(s)
    AC018683, AC104137, BC136257, BX537946
    Consensus CDS
    CCDS75133.1
    UniProtKB/TrEMBL
    B7ZKJ3, Q59FT4
    Related
    ENSP00000480763.1, ENST00000622150.4
    Conserved Domains (7) summary
    cd09546
    Location:9661031
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:9701028
    SAM; Sterile alpha motif
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:469559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:671937
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:676933
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:579671
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
  2. NM_001281766.3NP_001268695.1  ephrin type-A receptor 5 isoform d

    See identical proteins and their annotated locations for NP_001268695.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) lacks an alternate in-frame exon in the coding region compared to variant 3. The resulting protein (isoform d) is shorter but has the same N- and C-termini compared to isoform c.
    Source sequence(s)
    AC018683, AC104137, BC143427, BX537946
    Consensus CDS
    CCDS75131.1
    UniProtKB/TrEMBL
    B7ZKW7, Q59FT4
    Related
    ENSP00000478537.1, ENST00000613740.5
    Conserved Domains (7) summary
    cd09546
    Location:9441009
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:9481006
    SAM; Sterile alpha motif
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:469559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:649915
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:654911
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:579649
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
  3. NM_001281767.3NP_001268696.1  ephrin type-A receptor 5 isoform e

    See identical proteins and their annotated locations for NP_001268696.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) includes a 3' terminal exon that extends past a splice site used in variant c, resulting in a different 3' coding region and 3' UTR. The resulting protein (isoform e) is shorter and has a distinct C-terminus compared to isoform c.
    Source sequence(s)
    AB209375, AC018683, AC104137, BM664168, H11658
    Consensus CDS
    CCDS75132.1
    UniProtKB/TrEMBL
    F8VP57, Q59FT4
    Related
    ENSP00000427638.1, ENST00000511294.1
    Conserved Domains (6) summary
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:469559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:671937
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam00041
    Location:359447
    fn3; Fibronectin type III domain
    pfam14575
    Location:576673
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:9661004
    SAM_superfamily; SAM (Sterile alpha motif )
  4. NM_001318761.2NP_001305690.1  ephrin type-A receptor 5 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) contains an alternate exon in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 3. The resulting protein (isoform f) has a shorter N-terminus compared to isoform c.
    Source sequence(s)
    AC018683, BC136258, BX537946
    UniProtKB/TrEMBL
    Q59FT4
    Conserved Domains (7) summary
    cd09546
    Location:897962
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:901959
    SAM; Sterile alpha motif
    cd00063
    Location:400490
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:602868
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:607864
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:510602
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl02704
    Location:1163
    EphR_LBD; Ligand Binding Domain of Ephrin Receptors
  5. NM_004439.8NP_004430.4  ephrin type-A receptor 5 isoform a

    See identical proteins and their annotated locations for NP_004430.4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) used an alternate splice site in the coding region compared to variant 3. The resulting protein (isoform a) is shorter but has the same N- and C-termini compared to isoform c.
    Source sequence(s)
    AB209375, AC018683, AC104137, BC136257, BX537946, X95425
    Consensus CDS
    CCDS3513.1
    UniProtKB/Swiss-Prot
    P54756, Q7Z3F2
    UniProtKB/TrEMBL
    A0A384MU00, Q59FT4
    Related
    ENSP00000273854.3, ENST00000273854.7
    Conserved Domains (6) summary
    cd09546
    Location:9651030
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:469559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:670936
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam00041
    Location:359447
    fn3; Fibronectin type III domain
    pfam14575
    Location:578670
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
  6. NM_182472.5NP_872272.2  ephrin type-A receptor 5 isoform b

    See identical proteins and their annotated locations for NP_872272.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and lacks an alternate exon in the coding region compared to variant 3. The resulting protein (isoform b) is shorter but has the same N- and C-termini compared to isoform c.
    Source sequence(s)
    AB209375, AC018683, AC104137, BC136257, BX537946, L36644, X95425
    Consensus CDS
    CCDS3514.1
    UniProtKB/TrEMBL
    Q59FT4
    Related
    ENSP00000346899.4, ENST00000354839.8
    Conserved Domains (7) summary
    cd09546
    Location:9431008
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:9471005
    SAM; Sterile alpha motif
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:469559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:648914
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:653910
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:578648
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    65319567..65670489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047449763.1XP_047305719.1  ephrin type-A receptor 5 isoform X5

  2. XM_017007880.3XP_016863369.1  ephrin type-A receptor 5 isoform X6

    UniProtKB/TrEMBL
    Q59FT4
  3. XM_005265653.5XP_005265710.1  ephrin type-A receptor 5 isoform X4

    UniProtKB/TrEMBL
    F8W9W0, Q59FT4
    Related
    ENSP00000389208.2, ENST00000432638.6
    Conserved Domains (7) summary
    cd09546
    Location:802867
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:806864
    SAM; Sterile alpha motif
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:305395
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:507773
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:512769
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:415507
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
  4. XM_047449762.1XP_047305718.1  ephrin type-A receptor 5 isoform X3

  5. XM_017007878.3XP_016863367.1  ephrin type-A receptor 5 isoform X2

    UniProtKB/TrEMBL
    Q59FT4
  6. XM_011531735.4XP_011530037.1  ephrin type-A receptor 5 isoform X1

    UniProtKB/TrEMBL
    Q59FT4
    Conserved Domains (7) summary
    cd09546
    Location:854919
    SAM_EPH-A5; SAM domain of EPH-A5 subfamily of tyrosine kinase receptors
    smart00454
    Location:858916
    SAM; Sterile alpha motif
    cd10483
    Location:60232
    EphR_LBD_A5; Ligand Binding Domain of Ephrin type-A Receptor 5
    cd00063
    Location:357447
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd05066
    Location:559825
    PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
    pfam07714
    Location:564821
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:467559
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
  7. XM_017007881.3XP_016863370.1  ephrin type-A receptor 5 isoform X7

    UniProtKB/TrEMBL
    Q59FT4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    68756500..69108844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054349189.1XP_054205164.1  ephrin type-A receptor 5 isoform X5

  2. XM_054349190.1XP_054205165.1  ephrin type-A receptor 5 isoform X6

  3. XM_054349188.1XP_054205163.1  ephrin type-A receptor 5 isoform X4

    UniProtKB/TrEMBL
    F8W9W0
  4. XM_054349187.1XP_054205162.1  ephrin type-A receptor 5 isoform X3

  5. XM_054349186.1XP_054205161.1  ephrin type-A receptor 5 isoform X2

  6. XM_054349185.1XP_054205160.1  ephrin type-A receptor 5 isoform X1

  7. XM_054349191.1XP_054205166.1  ephrin type-A receptor 5 isoform X7