U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC18992943 auxin response factor 5 [ Eutrema salsugineum ]

Gene ID: 18992943, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC18992943
Gene description
auxin response factor 5
Locus tag
EUTSA_v10006748mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC18992943 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256612.1 (8661583..8666161, complement)

NW_006256612.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 32 Neighboring gene zinc finger CCCH domain-containing protein 6 Neighboring gene auxin-responsive protein SAUR50 Neighboring gene filament-like plant protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006256612 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
auxin response factor 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256612.1 Reference Eutsalg1_0

    Range
    8661583..8666161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006416395.2 → XP_006416458.1  auxin response factor 5

    See identical proteins and their annotated locations for XP_006416458.1

    UniProtKB/TrEMBL
    V4MSL0
    Conserved Domains (3) summary
    pfam02309
    Location:804 → 872
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:155 → 257
    B3; B3 DNA binding domain
    pfam06507
    Location:287 → 364
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases