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W06E11.1 RNB domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189252, updated on 2-Nov-2024

Summary

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Official Symbol
W06E11.1
Official Full Name
RNB domain-containing protein
Primary source
WormBase:WBGene00021061
Locus tag
CELE_W06E11.1
See related
AllianceGenome:WB:WBGene00021061
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in tRNA transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See W06E11.1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (642059..646343)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Golgin subfamily A member 7/ERF4 domain-containing protein Neighboring gene Major sperm protein Neighboring gene Protein orai Neighboring gene BRICHOS domain-containing protein;BRICHOS domain-containing protein C09F5.1 Neighboring gene Putative zinc finger protein C09F5.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNB domain-containing protein
NP_497229.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    642059..646343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064828.2 → NP_497229.1  RNB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497229.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23206
    Conserved Domains (1) summary
    pfam04801
    Location:34 → 470
    Sin_N; Sin-like protein conserved region
Nucleotide Protein
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