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LOC18789835 transcription factor bHLH80 [ Prunus persica (peach) ]

Gene ID: 18789835, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18789835
Gene description
transcription factor bHLH80
Locus tag
PRUPE_1G554600
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18789835 in Genome Data Viewer
Location:
chromosome: G1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G1 NC_034009.1 (45291073..45296499, complement)

Chromosome G1 - NC_034009.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 88F5 Neighboring gene uncharacterized LOC18793905 Neighboring gene sugar carrier protein A Neighboring gene 26S proteasome non-ATPase regulatory subunit 1 homolog A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034009.1 Chromosome G1 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034009.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    45291073..45296499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020566041.1 → XP_020421630.1  transcription factor bHLH80

    UniProtKB/TrEMBL
    A0A251RI74, M5Y375
    Conserved Domains (1) summary
    cd11393
    Location:162 → 215
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  2. XM_007227512.2 → XP_007227574.1  transcription factor bHLH80

    See identical proteins and their annotated locations for XP_007227574.1

    UniProtKB/TrEMBL
    A0A251RI74, M5Y375
    Conserved Domains (1) summary
    cd11393
    Location:162 → 215
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

RNA

  1. XR_002272047.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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