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LOC18785735 MADS-box transcription factor 50 [ Prunus persica (peach) ]

Gene ID: 18785735, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18785735
Gene description
MADS-box transcription factor 50
Locus tag
PRUPE_2G110900
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18785735 in Genome Data Viewer
Location:
chromosome: G2
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G2 NC_034010.1 (16913576..16914676, complement)

Chromosome G2 - NC_034010.1Genomic Context describing neighboring genes Neighboring gene WD-40 repeat-containing protein MSI1 Neighboring gene putative germin-like protein 9-2 Neighboring gene putative germin-like protein 9-2 Neighboring gene putative germin-like protein 9-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034010.1 Chromosome G2 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034010.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    16913576..16914676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007219358.1 → XP_007219420.1  MADS-box transcription factor 50

    See identical proteins and their annotated locations for XP_007219420.1

    UniProtKB/TrEMBL
    M5X3X5
    Conserved Domains (1) summary
    cd00266
    Location:2 → 87
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein Strain
Heading Accession and Version

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