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LOC18782264 transcription factor PIF4 [ Prunus persica (peach) ]

Gene ID: 18782264, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18782264
Gene description
transcription factor PIF4
Locus tag
PRUPE_3G179800
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18782264 in Genome Data Viewer
Location:
chromosome: G3
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G3 NC_034011.1 (19574199..19578623)

Chromosome G3 - NC_034011.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B8 Neighboring gene uncharacterized oxidoreductase At1g06690, chloroplastic Neighboring gene probable polyamine oxidase 2 Neighboring gene protein NPG1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034011.1 Chromosome G3 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034011.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    19574199..19578623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007216194.2 → XP_007216256.2  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    A0A251Q323
    Conserved Domains (1) summary
    cd00083
    Location:350 → 401
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  2. XM_020560686.1 → XP_020416275.1  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    A0A251Q323
    Conserved Domains (1) summary
    cd00083
    Location:350 → 401
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  3. XM_020560685.1 → XP_020416274.1  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    A0A251Q323
    Conserved Domains (1) summary
    cd00083
    Location:350 → 401
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  4. XM_020560687.1 → XP_020416276.1  transcription factor PIF4 isoform X2

    UniProtKB/TrEMBL
    A0A251Q583
    Conserved Domains (1) summary
    cd00083
    Location:350 → 401
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein Strain
Heading Accession and Version

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