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LOC18780251 pathogenesis-related genes transcriptional activator PTI5 [ Prunus persica (peach) ]

Gene ID: 18780251, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18780251
Gene description
pathogenesis-related genes transcriptional activator PTI5
Locus tag
PRUPE_4G055500
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18780251 in Genome Data Viewer
Location:
chromosome: G4
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G4 NC_034012.1 (2667469..2668517)

Chromosome G4 - NC_034012.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 9 Neighboring gene LOB domain-containing protein 27 Neighboring gene ethylene-responsive transcription factor ERF091 Neighboring gene GDSL esterase/lipase At5g45950 Neighboring gene negative regulator of systemic acquired resistance SNI1 Neighboring gene D-tyrosyl-tRNA(Tyr) deacylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034012.1 Chromosome G4 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pathogenesis-related genes transcriptional activator PTI5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034012.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    2667469..2668517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007212057.2 → XP_007212119.1  pathogenesis-related genes transcriptional activator PTI5

    See identical proteins and their annotated locations for XP_007212119.1

    UniProtKB/TrEMBL
    M5WVE9
    Conserved Domains (1) summary
    smart00380
    Location:60 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein Strain
Heading Accession and Version

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