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LOC18778037 transcription factor SRM1 [ Prunus persica (peach) ]

Gene ID: 18778037, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18778037
Gene description
transcription factor SRM1
Locus tag
PRUPE_5G217700
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18778037 in Genome Data Viewer
Location:
chromosome: G5
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G5 NC_034013.1 (17062376..17064376)

Chromosome G5 - NC_034013.1Genomic Context describing neighboring genes Neighboring gene leucoanthocyanidin reductase Neighboring gene protein DENND6A Neighboring gene histone deacetylase 15 Neighboring gene uncharacterized LOC18776643

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034013.1 Chromosome G5 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SRM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034013.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    17062376..17064376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007209323.2 → XP_007209385.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_007209385.1

    UniProtKB/TrEMBL
    M5WA37
    Conserved Domains (2) summary
    TIGR01557
    Location:130 → 182
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:7 → 55
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein Strain
Heading Accession and Version

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