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LOC18777327 transcription factor MYC2 [ Prunus persica (peach) ]

Gene ID: 18777327, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18777327
Gene description
transcription factor MYC2
Locus tag
PRUPE_5G035400
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18777327 in Genome Data Viewer
Location:
chromosome: G5
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G5 NC_034013.1 (4029191..4031957)

Chromosome G5 - NC_034013.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 21 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD8 Neighboring gene uncharacterized LOC18775701 Neighboring gene uncharacterized LOC109949208

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034013.1 Chromosome G5 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034013.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    4029191..4031957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020563700.1 → XP_020419289.1  transcription factor MYC2

    UniProtKB/TrEMBL
    A0A251P353
    Conserved Domains (2) summary
    cd00083
    Location:510 → 561
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:82 → 262
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein Strain
Heading Accession and Version

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