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LOC18770028 heat stress transcription factor C-1 [ Prunus persica (peach) ]

Gene ID: 18770028, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18770028
Gene description
heat stress transcription factor C-1
Locus tag
PRUPE_7G231100
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18770028 in Genome Data Viewer
Location:
chromosome: G7
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G7 NC_034015.1 (20253187..20254751)

Chromosome G7 - NC_034015.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene kinesin-like protein KIN-13B Neighboring gene indole-3-pyruvate monooxygenase YUCCA2 Neighboring gene uncharacterized LOC18771485

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034015.1 Chromosome G7 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor C-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034015.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    20253187..20254751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020568186.1 → XP_020423775.1  heat stress transcription factor C-1

    UniProtKB/TrEMBL
    A0A251NFN3
    Conserved Domains (1) summary
    smart00415
    Location:11 → 102
    HSF; heat shock factor
Nucleotide Protein Strain
Heading Accession and Version

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