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cut-5 Cuticlin-5 [ Caenorhabditis elegans ]

Gene ID: 187677, updated on 2-Nov-2024

Summary

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Official Symbol
cut-5
Official Full Name
Cuticlin-5
Primary source
WormBase:WBGene00011104
Locus tag
CELE_R07E3.3
See related
AllianceGenome:WB:WBGene00011104
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be located in plasma membrane. Is expressed in seam cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cut-5 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Sequence:
Chromosome: X; NC_003284.9 (10333858..10338200, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Phospholipid/glycerol acyltransferase domain-containing protein Neighboring gene ADP/ATP translocase Neighboring gene ncRNA Neighboring gene Glycine Rich Secreted Protein Neighboring gene Papain family cysteine protease;Pept_C1 domain-containing protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Zona Pellucida domain containing proteins, CUT-1, CUT-3 and CUT-5, play essential roles in the development of the larval alae in Caenorhabditis elegans. Sapio MR, et al. Dev Biol, 2005 Jun 1. PMID 15936343
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticlin-5
NP_001257099.1
  • Confirmed by transcript evidence
NP_001257100.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    10333858..10338200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001270171.3 → NP_001257100.1  Cuticlin-5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257100.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D0VWM7, Q21808
    Conserved Domains (1) summary
    cl27758
    Location:53 → 290
    Zona_pellucida; Zona pellucida-like domain

  2. NM_001270170.4 → NP_001257099.1  Cuticlin-5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257099.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D0VWM7
    Conserved Domains (1) summary
    smart00241
    Location:31 → 274
    ZP; Zona pellucida (ZP) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q21808.3

Gene LinkOut

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