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LOC18612464 transcriptional regulator STERILE APETALA [ Theobroma cacao (cacao) ]

Gene ID: 18612464, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18612464
Gene description
transcriptional regulator STERILE APETALA
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18612464 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (13167268..13172322, complement)

Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g26680, mitochondrial Neighboring gene cytochrome P450 71D8 Neighboring gene disease resistance protein RPS2 Neighboring gene LIM domain-containing protein WLIM2b-like Neighboring gene uncharacterized LOC108662302

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional regulator STERILE APETALA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    13167268..13172322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018120688.1 → XP_017976177.1  transcriptional regulator STERILE APETALA

    UniProtKB/TrEMBL
    A0A061DU18
Nucleotide Protein
Heading Accession and Version

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