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LOC18610402 zinc-finger homeodomain protein 11 [ Theobroma cacao (cacao) ]

Gene ID: 18610402, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18610402
Gene description
zinc-finger homeodomain protein 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18610402 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (40214905..40216208)

Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene probable apyrase 6 Neighboring gene uncharacterized LOC18610399 Neighboring gene TATA box-binding protein-associated factor RNA polymerase I subunit B Neighboring gene uncharacterized LOC18610404

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc-finger homeodomain protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    40214905..40216208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018116065.1 → XP_017971554.1  zinc-finger homeodomain protein 11

    UniProtKB/TrEMBL
    A0A061EA99
Nucleotide Protein
Heading Accession and Version

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