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LOC18608806 ethylene-responsive transcription factor LEP [ Theobroma cacao (cacao) ]

Gene ID: 18608806, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18608806
Gene description
ethylene-responsive transcription factor LEP
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18608806 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (12008302..12009135, complement)

Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18608803 Neighboring gene U-box domain-containing protein 44 Neighboring gene nudix hydrolase 13, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At4g21065

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor LEP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    12008302..12009135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007043680.2 → XP_007043742.1  ethylene-responsive transcription factor LEP

    See identical proteins and their annotated locations for XP_007043742.1

    UniProtKB/TrEMBL
    A0A061EB96
    Conserved Domains (1) summary
    smart00380
    Location:32 → 92
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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