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LOC18605122 MADS-box transcription factor 23 [ Theobroma cacao (cacao) ]

Gene ID: 18605122, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18605122
Gene description
MADS-box transcription factor 23
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18605122 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 3 NC_030852.1 (26005387..26009637)

Chromosome 3 - NC_030852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18605120 Neighboring gene uncharacterized LOC18605121 Neighboring gene uncharacterized LOC108661080 Neighboring gene gamma carbonic anhydrase-like 1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030852.1 Chromosome 3 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030852.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    26005387..26009637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007037945.2 → XP_007038007.1  MADS-box transcription factor 23 isoform X2

    See identical proteins and their annotated locations for XP_007038007.1

    UniProtKB/TrEMBL
    A0A061FZK9
    Conserved Domains (2) summary
    cd00265
    Location:2 → 70
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 169
    K-box; K-box region

  2. XM_018116819.1 → XP_017972308.1  MADS-box transcription factor 23 isoform X1

Nucleotide Protein
Heading Accession and Version

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