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LOC18604882 agamous-like MADS-box protein AGL8 homolog [ Theobroma cacao (cacao) ]

Gene ID: 18604882, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18604882
Gene description
agamous-like MADS-box protein AGL8 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18604882 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 3 NC_030852.1 (24084494..24102570)

Chromosome 3 - NC_030852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108661258 Neighboring gene uncharacterized LOC108661257 Neighboring gene uncharacterized LOC108661294 Neighboring gene uncharacterized LOC108661231 Neighboring gene uncharacterized LOC18604885

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030852.1 Chromosome 3 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL8 homolog; truncated transcription factor CAULIFLOWER A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030852.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    24084494..24102570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018118462.1 → XP_017973951.1  agamous-like MADS-box protein AGL8 homolog isoform X3

    UniProtKB/TrEMBL
    A0A061FX88

  2. XM_018118461.1 → XP_017973950.1  truncated transcription factor CAULIFLOWER A isoform X1

    UniProtKB/TrEMBL
    A0A061FX88

  3. XM_007037572.2 → XP_007037634.2  truncated transcription factor CAULIFLOWER A isoform X2

    UniProtKB/TrEMBL
    A0A061FX88
Nucleotide Protein
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