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LOC18604445 transcription repressor KAN1 [ Theobroma cacao (cacao) ]

Gene ID: 18604445, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18604445
Gene description
transcription repressor KAN1
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18604445 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 3 NC_030852.1 (8718503..8728985)

Chromosome 3 - NC_030852.1Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit zeta 1 Neighboring gene uncharacterized LOC108661302 Neighboring gene uncharacterized LOC108661133 Neighboring gene uncharacterized LOC108661226

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030852.1 Chromosome 3 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription repressor KAN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030852.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    8718503..8728985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018118405.1 → XP_017973894.1  transcription repressor KAN1 isoform X1

    UniProtKB/TrEMBL
    A0A061G387

  2. XM_007036932.2 → XP_007036994.2  transcription repressor KAN1 isoform X2

    UniProtKB/TrEMBL
    A0A061FVC1

  3. XM_007036934.2 → XP_007036996.2  transcription repressor KAN1 isoform X3

    UniProtKB/TrEMBL
    A0A061FX92
Nucleotide Protein
Heading Accession and Version

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