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LOC18604429 protein FAR-RED ELONGATED HYPOCOTYL 3 [ Theobroma cacao (cacao) ]

Gene ID: 18604429, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18604429
Gene description
protein FAR-RED ELONGATED HYPOCOTYL 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18604429 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 3 NC_030852.1 (8086784..8091231)

Chromosome 3 - NC_030852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108661255 Neighboring gene uncharacterized LOC108661253 Neighboring gene uncharacterized LOC108661298 Neighboring gene uncharacterized LOC108661331

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030852.1 Chromosome 3 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAR-RED ELONGATED HYPOCOTYL 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030852.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    8086784..8091231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018118050.1 → XP_017973539.1  protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2

    UniProtKB/TrEMBL
    A0A061FWL4

  2. XM_007036905.2 → XP_007036967.2  protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1

    UniProtKB/TrEMBL
    A0A061FWL4

  3. XM_018118049.1 → XP_017973538.1  protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1

    UniProtKB/TrEMBL
    A0A061FWL4
Nucleotide Protein
Heading Accession and Version

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