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LOC18597532 trihelix transcription factor GT-3b [ Theobroma cacao (cacao) ]

Gene ID: 18597532, updated on 1-Jun-2019

Summary

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Gene symbol
LOC18597532
Gene description
trihelix transcription factor GT-3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18597532 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 5 NC_030854.1 (684057..685770, complement)

Chromosome 5 - NC_030854.1Genomic Context describing neighboring genes Neighboring gene omega-3 fatty acid desaturase, chloroplastic Neighboring gene uncharacterized LOC18597528 Neighboring gene calcium-dependent protein kinase 13 Neighboring gene leucoanthocyanidin dioxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030854.1 Chromosome 5 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
trihelix transcription factor GT-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030854.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    684057..685770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018120803.1 → XP_017976292.1  trihelix transcription factor GT-3b

    UniProtKB/TrEMBL
    A0A061ERD1

  2. XM_018120802.1 → XP_017976291.1  trihelix transcription factor GT-3b

    UniProtKB/TrEMBL
    A0A061ERD1

  3. XM_007026619.2 → XP_007026681.1  trihelix transcription factor GT-3b

    See identical proteins and their annotated locations for XP_007026681.1

    UniProtKB/TrEMBL
    A0A061ERD1
    Conserved Domains (1) summary
    cd12203
    Location:26 → 91
    GT1; GT1, myb-like, SANT family
Nucleotide Protein
Heading Accession and Version

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