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LOC18596297 ethylene-responsive transcription factor RAP2-12 [ Theobroma cacao (cacao) ]

Gene ID: 18596297, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18596297
Gene description
ethylene-responsive transcription factor RAP2-12
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18596297 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 6 NC_030855.1 (20560111..20563177, complement)

Chromosome 6 - NC_030855.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase 5 Neighboring gene uncharacterized LOC18596296 Neighboring gene subtilisin-like protease SBT1.5 Neighboring gene agamous-like MADS-box protein AGL61

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030855.1 Chromosome 6 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor RAP2-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030855.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    20560111..20563177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018123522.1 → XP_017979011.1  ethylene-responsive transcription factor RAP2-12

    UniProtKB/TrEMBL
    A0A061GJV1

  2. XM_007024685.2 → XP_007024747.1  ethylene-responsive transcription factor RAP2-12

    See identical proteins and their annotated locations for XP_007024747.1

    UniProtKB/TrEMBL
    A0A061GJV1
    Conserved Domains (1) summary
    smart00380
    Location:121 → 178
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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