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LOC18589779 AP2-like ethylene-responsive transcription factor PLT2 [ Theobroma cacao (cacao) ]

Gene ID: 18589779, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18589779
Gene description
AP2-like ethylene-responsive transcription factor PLT2
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18589779 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (28338371..28340975, complement)

Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase UCNL Neighboring gene uncharacterized LOC108663392 Neighboring gene uncharacterized LOC108663190 Neighboring gene uncharacterized LOC108663192

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor PLT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    28338371..28340975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018127109.1 → XP_017982598.1  AP2-like ethylene-responsive transcription factor PLT2

    UniProtKB/TrEMBL
    A0A061GZ62
Nucleotide Protein
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