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LOC18588376 zinc finger CCCH domain-containing protein 65 [ Theobroma cacao (cacao) ]

Gene ID: 18588376, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18588376
Gene description
zinc finger CCCH domain-containing protein 65
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18588376 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (4513069..4518866, complement)

Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene heat stress transcription factor A-2 Neighboring gene 5'-nucleotidase SurE Neighboring gene 30S ribosomal protein S16 Neighboring gene nucleosome assembly protein 1;2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 65

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    4513069..4518866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018127735.1 → XP_017983224.1  zinc finger CCCH domain-containing protein 65 isoform X2

    UniProtKB/TrEMBL
    A0A061GLJ5

  2. XM_007012735.2 → XP_007012797.2  zinc finger CCCH domain-containing protein 65 isoform X1

    UniProtKB/TrEMBL
    A0A061GLJ5
Nucleotide Protein
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