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LOC18588048 homeobox protein ATH1 [ Theobroma cacao (cacao) ]

Gene ID: 18588048, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18588048
Gene description
homeobox protein ATH1
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18588048 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 9 NC_030858.1 (2659079..2663712, complement)

Chromosome 9 - NC_030858.1Genomic Context describing neighboring genes Neighboring gene pollen-specific protein SF21 Neighboring gene inorganic pyrophosphatase 3 Neighboring gene abscisic acid receptor PYL2 Neighboring gene transcription factor MYB1R1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030858.1 Chromosome 9 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein ATH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030858.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    2659079..2663712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007012199.2 → XP_007012261.2  homeobox protein ATH1

    UniProtKB/TrEMBL
    A0A061GJ28

  2. XM_018128463.1 → XP_017983952.1  homeobox protein ATH1

    UniProtKB/TrEMBL
    A0A061GJ28

  3. XM_018128461.1 → XP_017983950.1  homeobox protein ATH1

    UniProtKB/TrEMBL
    A0A061GJ28
Nucleotide Protein
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