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LOC18445160 MYB-like transcription factor ETC1 [ Amborella trichopoda ]

Gene ID: 18445160, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18445160
Gene description
MYB-like transcription factor ETC1
Locus tag
AMTR_s00057p00119300
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18445160 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006500010.1 (1562052..1562870)

NW_006500010.1Genomic Context describing neighboring genes Neighboring gene probable galacturonosyltransferase-like 7 Neighboring gene probable protein phosphatase 2C 34 Neighboring gene uncharacterized LOC110008202 Neighboring gene MYB-like transcription factor ETC3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006500010.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MYB-like transcription factor ETC1; uncharacterized protein LOC18445160

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006500010.1 Reference AMTR1.0 Primary Assembly

    Range
    1562052..1562870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006855303.2 → XP_006855365.1  MYB-like transcription factor ETC1 isoform X1

    See identical proteins and their annotated locations for XP_006855365.1

    UniProtKB/TrEMBL
    U5D5X4
    Conserved Domains (1) summary
    cd00167
    Location:53 → 92
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_011629082.2 → XP_011627384.1  uncharacterized protein LOC18445160 isoform X2

Nucleotide Protein
Heading Accession and Version

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