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LOC18444567 transcription factor ORG2 [ Amborella trichopoda ]

Gene ID: 18444567, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18444567
Gene description
transcription factor ORG2
Locus tag
AMTR_s00063p00154030
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18444567 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499948.1 (2318495..2321226)

NW_006499948.1Genomic Context describing neighboring genes Neighboring gene putative amidohydrolase YtcJ Neighboring gene uncharacterized LOC18444564 Neighboring gene ankyrin repeat domain-containing protein 54 Neighboring gene protein LATERAL ROOT PRIMORDIUM 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499948.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ORG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499948.1 Reference AMTR1.0 Primary Assembly

    Range
    2318495..2321226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006854734.3 → XP_006854796.1  transcription factor ORG2

    See identical proteins and their annotated locations for XP_006854796.1

    UniProtKB/TrEMBL
    U5D7C2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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