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LOC18441380 growth-regulating factor 4 [ Amborella trichopoda ]

Gene ID: 18441380, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18441380
Gene description
growth-regulating factor 4
Locus tag
AMTR_s00040p00189460
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18441380 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499824.1 (3315260..3319314, complement)

NW_006499824.1Genomic Context describing neighboring genes Neighboring gene pectinesterase Neighboring gene 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC18441382 Neighboring gene RAB6-interacting golgin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499824.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
growth-regulating factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499824.1 Reference AMTR1.0 Primary Assembly

    Range
    3315260..3319314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006851498.3 → XP_006851561.1  growth-regulating factor 4 isoform X1

    See identical proteins and their annotated locations for XP_006851561.1

    UniProtKB/TrEMBL
    W1PSZ6
    Conserved Domains (2) summary
    pfam08879
    Location:134 → 175
    WRC; WRC
    pfam08880
    Location:71 → 105
    QLQ; QLQ

  2. XM_020671757.1 → XP_020527416.1  growth-regulating factor 4 isoform X2

    Conserved Domains (3) summary
    pfam08879
    Location:71 → 112
    WRC
    pfam08880
    Location:8 → 42
    QLQ
    cl02571
    Location:146 → 348
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

  3. XM_020671755.1 → XP_020527414.1  growth-regulating factor 4 isoform X2

    Conserved Domains (3) summary
    pfam08879
    Location:71 → 112
    WRC
    pfam08880
    Location:8 → 42
    QLQ
    cl02571
    Location:146 → 348
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Nucleotide Protein
Heading Accession and Version

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