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LOC18430463 axial regulator YABBY 5 [ Amborella trichopoda ]

Gene ID: 18430463, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18430463
Gene description
axial regulator YABBY 5
Locus tag
AMTR_s00096p00054100
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18430463 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497781.1 (512974..522786, complement)

NW_006497781.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18430461 Neighboring gene uncharacterized LOC18430462 Neighboring gene purple acid phosphatase 18-like Neighboring gene uncharacterized LOC110006932

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497781.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant ovule development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polarity specification of adaxial/abaxial axis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
axial regulator YABBY 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497781.1 Reference AMTR1.0 Primary Assembly

    Range
    512974..522786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020665022.1 → XP_020520681.1  axial regulator YABBY 5 isoform X2

    Conserved Domains (1) summary
    pfam04690
    Location:11 → 162
    YABBY; YABBY protein

  2. XM_020665023.1 → XP_020520682.1  axial regulator YABBY 5 isoform X3

    Conserved Domains (1) summary
    pfam04690
    Location:11 → 152
    YABBY; YABBY protein

  3. XM_006840616.2 → XP_006840679.1  axial regulator YABBY 5 isoform X1

    See identical proteins and their annotated locations for XP_006840679.1

    UniProtKB/TrEMBL
    W1P3Y5
    Conserved Domains (1) summary
    pfam04690
    Location:11 → 162
    YABBY; YABBY protein
Nucleotide Protein
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