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LOC18429326 BEL1-like homeodomain protein 7 [ Amborella trichopoda ]

Gene ID: 18429326, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18429326
Gene description
BEL1-like homeodomain protein 7
Locus tag
AMTR_s00002p00243900
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18429326 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497648.1 (5808787..5818168)

NW_006497648.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum oxidoreductin-1 Neighboring gene uncharacterized LOC18429323 Neighboring gene C-Myc-binding protein homolog Neighboring gene 60S ribosomal protein L18a-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497648.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEL1-like homeodomain protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497648.1 Reference AMTR1.0 Primary Assembly

    Range
    5808787..5818168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011623248.2 → XP_011621550.1  BEL1-like homeodomain protein 7

    See identical proteins and their annotated locations for XP_011621550.1

    UniProtKB/TrEMBL
    W1P0U2
    Conserved Domains (2) summary
    smart00574
    Location:244 → 390
    POX; domain associated with HOX domains
    pfam05920
    Location:457 → 496
    Homeobox_KN; Homeobox KN domain

  2. XM_011623249.2 → XP_011621551.1  BEL1-like homeodomain protein 7

    See identical proteins and their annotated locations for XP_011621551.1

    UniProtKB/TrEMBL
    W1P0U2
    Conserved Domains (2) summary
    smart00574
    Location:244 → 390
    POX; domain associated with HOX domains
    pfam05920
    Location:457 → 496
    Homeobox_KN; Homeobox KN domain

  3. XM_006838612.3 → XP_006838675.1  BEL1-like homeodomain protein 7

    See identical proteins and their annotated locations for XP_006838675.1

    UniProtKB/TrEMBL
    W1P0U2
    Conserved Domains (2) summary
    smart00574
    Location:244 → 390
    POX; domain associated with HOX domains
    pfam05920
    Location:457 → 496
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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