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LOC18427631 zinc finger protein 5 [ Amborella trichopoda ]

Gene ID: 18427631, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18427631
Gene description
zinc finger protein 5
Locus tag
AMTR_s00088p00145510
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18427631 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497417.1 (2119469..2120907, complement)

NW_006497417.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 40 Neighboring gene chaperone protein dnaJ 16 Neighboring gene putative DNA glycosylase At3g47830 Neighboring gene senescence-associated carboxylesterase 101

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497417.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trichome differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trichome morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497417.1 Reference AMTR1.0 Primary Assembly

    Range
    2119469..2120907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006836680.3 → XP_006836743.1  zinc finger protein 5

    See identical proteins and their annotated locations for XP_006836743.1

    UniProtKB/TrEMBL
    W1NRI4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases