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LOC18426251 agamous-like MADS-box protein AGL80 [ Amborella trichopoda ]

Gene ID: 18426251, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18426251
Gene description
agamous-like MADS-box protein AGL80
Locus tag
AMTR_s00095p00172370
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18426251 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006496932.1 (2797522..2798208)

NW_006496932.1Genomic Context describing neighboring genes Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene E3 ubiquitin-protein ligase At1g63170 Neighboring gene acidic endochitinase Neighboring gene UV radiation resistance-associated gene protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006496932.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006496932.1 Reference AMTR1.0 Primary Assembly

    Range
    2797522..2798208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006832909.1 → XP_006832972.1  agamous-like MADS-box protein AGL80

    See identical proteins and their annotated locations for XP_006832972.1

    UniProtKB/TrEMBL
    W1NT98
    Conserved Domains (1) summary
    cl00109
    Location:2 → 85
    MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
Nucleotide Protein
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