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LOC18421264 protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [ Amborella trichopoda ]

Gene ID: 18421264, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18421264
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Locus tag
AMTR_s05661p00002040
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18421264 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006494621.1 (7..1960)

NW_006494621.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006494621.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006494621.1 Reference AMTR1.0 Primary Assembly

    Range
    7..1960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006826085.2 → XP_006826148.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    See identical proteins and their annotated locations for XP_006826148.1

    UniProtKB/TrEMBL
    U5CKF0
    Conserved Domains (3) summary
    sd00017
    Location:246 → 266
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:362 → 378
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:244 → 266
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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