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C11H1.7 [ Caenorhabditis elegans ]

Gene ID: 182526, updated on 22-Aug-2024

Summary

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Official Symbol
C11H1.7
Primary source
WormBase:WBGene00007531
Locus tag
CELE_C11H1.7
See related
AllianceGenome:WB:WBGene00007531
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable signaling receptor binding activity. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 60. Orthologous to human CNPY3 (canopy FGF signaling regulator 3) and CNPY4 (canopy FGF signaling regulator 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: X
Exon count:
5
Sequence:
Chromosome: X; NC_003284.9 (14327529..14330193)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene AAA+ ATPase domain-containing protein;Peroxisomal ATPase PEX1 Neighboring gene CRAL-TRIO domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DUF3456 domain-containing protein
NP_001294801.1
  • Confirmed by transcript evidence
NP_001379119.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    14327529..14330193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392885.1 → NP_001379119.1  DUF3456 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDB0
    Conserved Domains (1) summary
    pfam11938
    Location:29 → 154
    DUF3456; TLR4 regulator and MIR-interacting MSAP

  2. NM_001307872.1 → NP_001294801.1  DUF3456 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294801.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A078BQJ2
    Conserved Domains (1) summary
    pfam11938
    Location:11 → 49
    DUF3456; TLR4 regulator and MIR-interacting MSAP
Nucleotide Protein
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