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Ntsr2 neurotensin receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 18217, updated on 2-Nov-2024

Summary

Official Symbol
Ntsr2provided by MGI
Official Full Name
neurotensin receptor 2provided by MGI
Primary source
MGI:MGI:108018
See related
Ensembl:ENSMUSG00000020591 AllianceGenome:MGI:108018
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NT2R; NTR2; NTRL; NT-R-2
Summary
Enables G protein-coupled neurotensin receptor activity. Acts upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and regulation of membrane potential. Located in membrane. Orthologous to human NTSR2 (neurotensin receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in genital fat pad adult (RPKM 70.4), cortex adult (RPKM 64.8) and 5 other tissues See more
Orthologs
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Genomic context

See Ntsr2 in Genome Data Viewer
Location:
12 A1.1; 12 7.98 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (16703477..16710223)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (16653443..16660236)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31636 Neighboring gene predicted gene, 53741 Neighboring gene STARR-seq mESC enhancer starr_31639 Neighboring gene lipin 1 Neighboring gene STARR-seq mESC enhancer starr_31643 Neighboring gene STARR-positive B cell enhancer ABC_E11503 Neighboring gene STARR-seq mESC enhancer starr_31645 Neighboring gene gene regulated by estrogen in breast cancer protein Neighboring gene E2F transcription factor 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Targeted (5)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled neurotensin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled neurotensin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in dendritic shaft ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in perikaryon ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
neurotensin receptor type 2
Names
low affinity neurotensin receptor
low-affinity levocabastine-sensitive neurotensin receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361702.2NP_001348631.1  neurotensin receptor type 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122228
    Conserved Domains (2) summary
    cd14964
    Location:3559
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:33233
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  2. NM_001361703.2NP_001348632.1  neurotensin receptor type 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC122228
    Consensus CDS
    CCDS88315.1
    UniProtKB/TrEMBL
    A0A1Y7VN85
    Related
    ENSMUSP00000152290.2, ENSMUST00000220892.2
    Conserved Domains (2) summary
    cd14964
    Location:3559
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:33233
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  3. NM_001412674.1NP_001399603.1  neurotensin receptor type 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122228
  4. NM_001412675.1NP_001399604.1  neurotensin receptor type 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC122228
  5. NM_008747.3NP_032773.2  neurotensin receptor type 2 isoform 1

    See identical proteins and their annotated locations for NP_032773.2

    Status: VALIDATED

    Source sequence(s)
    AC122228
    Consensus CDS
    CCDS36407.1
    UniProtKB/Swiss-Prot
    P70310, Q8VIF5
    UniProtKB/TrEMBL
    Q920Q5
    Related
    ENSMUSP00000106693.2, ENSMUST00000111064.3
    Conserved Domains (1) summary
    pfam00001
    Location:85358
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RNA

  1. NR_182023.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122228, AK081073
    Related
    ENSMUST00000222957.2
  2. NR_182024.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122228

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    16703477..16710223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)