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ptr-24 SSD domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181456, updated on 2-Nov-2024

Summary

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Official Symbol
ptr-24
Official Full Name
SSD domain-containing protein
Primary source
WormBase:WBGene00004238
Locus tag
CELE_F46G10.5
See related
AllianceGenome:WB:WBGene00004238
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in molting cycle. Predicted to be located in membrane. Predicted to be active in cytoplasmic vesicle membrane and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ptr-24 in Genome Data Viewer
Location:
chromosome: X
Exon count:
17
Sequence:
Chromosome: X; NC_003284.9 (13338028..13348125)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene NAD-dependent protein deacylase sir-2.3 Neighboring gene Fungal lipase-like domain-containing protein Neighboring gene Protein mxl-3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microbial metabolites regulate host lipid metabolism through NR5A-Hedgehog signalling. Lin CJ, et al. Nat Cell Biol, 2017 May. PMID 28436966, Free PMC Article
  2. Homologs of the Hh signalling network in C. elegans. Bürglin TR, et al. WormBook, 2006 Jan 28. PMID 18050469, Free PMC Article
  3. A C. elegans patched gene, ptc-1, functions in germ-line cytokinesis. Kuwabara PE, et al. Genes Dev, 2000 Aug 1. PMID 10921907, Free PMC Article
  4. The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans. Zugasti O, et al. Genome Res, 2005 Oct. PMID 16204193, Free PMC Article
  5. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Lehner B, et al. Nat Genet, 2006 Aug. PMID 16845399

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in molting cycle, collagen and cuticulin-based cuticle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in molting cycle, collagen and cuticulin-based cuticle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasmic vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SSD domain-containing protein
NP_001257219.1
  • Confirmed by transcript evidence
NP_001257220.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    13338028..13348125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001270290.5 → NP_001257219.1  SSD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257219.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6VQ56
    Conserved Domains (1) summary
    cl25655
    Location:117 → 841
    Patched; Patched family

  2. NM_001270291.2 → NP_001257220.1  SSD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257220.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6VQ55
    Conserved Domains (1) summary
    cl25655
    Location:51 → 710
    Patched; Patched family
Nucleotide Protein
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