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LOC18104866 transcription factor SPATULA [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18104866, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18104866
Gene description
transcription factor SPATULA
Locus tag
POPTR_014G025800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18104866 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (1599289..1602154)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (2209052..2211909)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene NAC domain-containing protein 72 Neighboring gene transcription factor bHLH95 Neighboring gene protein ALP1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPATULA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    1599289..1602154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024585409.2 → XP_024441177.1  transcription factor SPATULA isoform X2

    UniProtKB/TrEMBL
    A0A2K1XPG2
    Conserved Domains (1) summary
    smart00353
    Location:128 → 176
    HLH; helix loop helix domain

  2. XM_006374846.3 → XP_006374908.1  transcription factor SPATULA isoform X1

    See identical proteins and their annotated locations for XP_006374908.1

    UniProtKB/TrEMBL
    B9MVT5
    Conserved Domains (1) summary
    cd00083
    Location:126 → 177
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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