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LOC18102627 squamosa promoter-binding-like protein 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18102627, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18102627
Gene description
squamosa promoter-binding-like protein 1
Locus tag
POPTR_010G154000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18102627 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (16323406..16330469, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (16159105..16166159, complement)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance protein 3 Neighboring gene pentatricopeptide repeat-containing protein At3g06430, chloroplastic Neighboring gene truncated transcription factor CAULIFLOWER A Neighboring gene protein BIG GRAIN 1-like E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    16323406..16330469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006378501.3 → XP_006378563.3  squamosa promoter-binding-like protein 1 isoform X1

  2. XM_006378502.3 → XP_006378564.3  squamosa promoter-binding-like protein 1 isoform X1

  3. XM_024609745.2 → XP_024465513.2  squamosa promoter-binding-like protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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