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LOC18101209 zinc finger protein GAI-ASSOCIATED FACTOR 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18101209, updated on 10-Oct-2024

Summary

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Gene symbol
LOC18101209
Gene description
zinc finger protein GAI-ASSOCIATED FACTOR 1
Locus tag
POPTR_007G028800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18101209 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 7 NC_037291.2 (2200090..2203273)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 7 NC_037291.1 (2166555..2169759)

Chromosome 7 - NC_037291.2Genomic Context describing neighboring genes Neighboring gene splicing factor U2af large subunit B Neighboring gene uncharacterized LOC7478022 Neighboring gene probable protein phosphatase 2C 80 Neighboring gene uncharacterized LOC127905583

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GAI-ASSOCIATED FACTOR 1
Names
C2H2 family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037291.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2200090..2203273
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006380689.3 → XP_006380751.2  zinc finger protein GAI-ASSOCIATED FACTOR 1

    UniProtKB/TrEMBL
    A0A2I4KKJ4
Nucleotide Protein
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