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LOC18098446 transcription factor PIF3 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18098446, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18098446
Gene description
transcription factor PIF3
Locus tag
POPTR_005G001800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18098446 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (203148..208350, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (107849..113059, complement)

Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene transcription factor MYB61 Neighboring gene uncharacterized LOC18098445 Neighboring gene uncharacterized LOC112327475 Neighboring gene hydrophobic protein LTI6B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    203148..208350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024601608.2 → XP_024457376.1  transcription factor PIF3 isoform X3

    UniProtKB/TrEMBL
    A0A2K2A9N8
    Conserved Domains (1) summary
    cd00083
    Location:462 → 520
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  2. XM_006382191.3 → XP_006382253.1  transcription factor PIF3 isoform X1

    See identical proteins and their annotated locations for XP_006382253.1

    UniProtKB/TrEMBL
    A0A2K2A9N8
    Conserved Domains (1) summary
    cd00083
    Location:462 → 520
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  3. XM_024601607.2 → XP_024457375.1  transcription factor PIF3 isoform X2

    UniProtKB/TrEMBL
    A0A2K2A9N8, U5G9H3
    Conserved Domains (1) summary
    cd00083
    Location:461 → 519
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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