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LOC18097442 transcription factor bHLH112 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18097442, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18097442
Gene description
transcription factor bHLH112
Locus tag
POPTR_004G029100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18097442 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (2262301..2265577, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (2118921..2122147, complement)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 8 Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 Neighboring gene uncharacterized LOC112327131 Neighboring gene putative UDP-rhamnose:rhamnosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH112

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2262301..2265577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024600081.2 → XP_024455849.1  transcription factor bHLH112 isoform X3

    UniProtKB/TrEMBL
    A0A2K2AP18, A0A2K2AP24
    Conserved Domains (1) summary
    smart00353
    Location:355 → 398
    HLH; helix loop helix domain

  2. XM_006383923.3 → XP_006383985.1  transcription factor bHLH112 isoform X2

    See identical proteins and their annotated locations for XP_006383985.1

    UniProtKB/TrEMBL
    A0A3N7EXU6, U5GK46
    Conserved Domains (1) summary
    smart00353
    Location:355 → 398
    HLH; helix loop helix domain

  3. XM_024600079.2 → XP_024455847.1  transcription factor bHLH112 isoform X1

    UniProtKB/TrEMBL
    A0A2K2AP17, A0A3N7ERD2
    Conserved Domains (1) summary
    smart00353
    Location:355 → 398
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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